some readings on NuAcids

some readings
Kinetics of conformational fluctuations in DNA hairpin-loops
Hairpin Formation and Elongation of Biomolecules
Sequence Dependent Rigidity of Stranded DNA
From Simulation Data to Conformational Ensembles: Structure and dynamics-based methods
Recent advances in molecular dynamics simulation towards the realistic representation of biomolecules in solution
Expanded Sequence Dependence of Thermodynamics Parameters Improves Prediction of RNA secondary Structure
A direct approach to conformational dynamics based on hybrid monte carlo
Rna secondary structure: physical and computational aspects
long timestep by Schlick
theory for the conformational changes of double -stranded chain molecules
Rna folding transitions and cooperativity
rna secondary structure formation: a solvable model of heteropolymers folding
statistical thermodynamics of double-stranded polymer molecules
a semiflexible polymer model applied to loop formation in Dna hairpins
exploring the folding lanscape of a structureed RNA
approximate balanced truncation for very large systems using the method of snapshots
a dynamics programming algorithm for rna structure prediction including pseudoknots
algorithmic challenges in computational molecular biophysics by Schlick
set oriented numerical methods for dynamic systems
computation of essentail molecular dynamics by subdivision techniques I : baisic concept
optimized particle-mesh Ewald/multiple-time step integration for molecular dynamcis simulation by Schlick
identification of almost invariant aggregates in reversible nearly uncoupled markov chains
Detecting and locating near-optimal almost-invariant sets and cycles
congestion and almost invariant sets in dynamical systems